How do I…
Short tutorials on genomic and transcriptomic analyses.
Downloading data
Aligning RNA-seq
Variant calling
call variants from DNA-seq data
call variants from RNA-seq data
Expression analyses
perform differential gene expression
build gene co-expression networks
assess gene co-expression networks with EGAD
test for replicability of bulk RNA-seq samples with replicates with AuPairWise
test for replicability of single-cell RNA-seq with MetaNeighbor
allele specific expression analysis