BINF_tut

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Project maintained by sarbal Hosted on GitHub Pages — Theme by mattgraham

R and python tutorials

A set of tutorials designed for the undergraduate introduction to bioinformatics course (BINF2010).

Adapted from:

• https://github.com/jbkinney/23e_urp/
• https://ucdavis-bioinformatics-training.github.io/2022-Feb-Introduction-To-Python-For-Bioinformatics/python/python1

Week 1: Setting up:

Let’s start at the very beginning (a very good place to start)
Installation of sofware (R, RStudio, Python3 and VSCode) for windows, macs, or linux

Week 2: Python basics

First things first! Start here!

Week 3: Data Viz

Python visualisations.

Week 4: Snakes on a plane

Data wrangling.

Week 5: Biopython basics (and assignment help)

Help!

Week 6: BReak!

Week 7: Biopython advanced (and assignment help)

Help!

Week 8: R basics

Let’s get staRted.

Week 9: More R

Some visual things you can do with R.

Week 10: Shiny

• Shiny - R
• Shiny - python

  Inspired by many:

• https://github.com/data-lessons/DEPRECATED-R-genomics/
• https://www.datamentor.io/
• http://www.datacarpentry.org/R-genomics/
• https://github.com/cambiotraining/r-intro
• http://garrettgman.github.io/tidying/
• https://www.tidyverse.org/blog/2023/08/teach-tidyverse-23/